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Welcome to CCC-Catalog!

CCC-Catalog is designed as a comprehensive hub for cell-cell communication (CCC) analysis using single-cell RNA sequencing and spatial transcriptomics data. It offers an extensive, searchable catalog of CCC tools and resources, tailored to users' specific needs and preferences. Additionally, it provides an overview of the latest literature on CCC analysis, including references to recent reviews, comparisons, and benchmarking studies.

Find a CCC Resource

Visit the Resources for a detailed catalog of CCC resources, including all major ligand-receptor databases and more. Use filters to find resources based on:

Find a CCC Tool

The Tools offers a complete catalog of CCC tools. Narrow your search based on:

Literature on CCC Analysis

The Literature page includes summaries of the most up-to-date studies on CCC tools and resources, covering review articles, comparison studies, and benchmarking analyses.

Help Us Expand!

Are you a developer of a new CCC tool, resource, or publication? Or do you think any key CCC resources, tools, or literature are missing?
Visit our Contribute page and let us know!

Citing CCC-Catalog

Giulia Cesaro, James Shiniti Nagai, Nicolò Gnoato, Alice Chiodi, Gaia Tussardi, Vanessa Klöker, Carmelo Vittorio Musumarra, Ettore Mosca, Ivan G Costa, Barbara Di Camillo, Enrica Calura, Giacomo Baruzzo, Advances and challenges in cell-cell communication inference: a comprehensive review of tools, resources, and future directions, Briefings in Bioinformatics, Volume 26, Issue 3, May 2025, bbaf280, DOI: 10.1093/bib/bbaf280